A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex
This paper introduces Kleborate, a new bioinformatics tool for analyzing Klebsiella pneumoniae genomes. Kleborate rapidly identifies species, AMR genes, virulence factors, and other key features, providing valuable information for genomic surveillance and epidemiological studies. The tool was applied to public genome datasets, revealing trends in AMR, virulence, and the convergence of these traits.